Results for "BLAST Parser"
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How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data...lowing error message. In this example, XML::Parser Perl module is missing. Can't locate XML/parser.pm in @INC (@INC contains:/us...e, let us search, download and install XML::Parser Perl module. I have downloade...3943 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous gene...sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST...2603 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonst...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST...2237 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star.edu.sg Bio research and devel...for teaching bioinformatics. These include animated tutorials on topicssuch as BLAST,...2186 days ago
Installing Bandage on Ubunty !
...(master) lsBandage.pro BandageTests.pro blast build_scripts command_line CO.../home/urbe/anaconda3/bin/uic ui/enteroneblastquerydialog.ui -o ui_enteroneb...ibutes.o FruchtermanReingold.o NMM.o GmlParser.o simple_graph_alg.o basic.o XmlParser.o String.o Hashing.o PoolMemo...2182 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity anal...gd depends on the following software BLASTMCLMUSCLE/MAFFT/PRANKPAMLPhyML...nda conda create -n wgd python=3.5 blast mcl muscle mafft prank paml f...pon_cds.out/Sspon.v20190103.cds.fasta.blast....1148 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of hos...ly) Choice of multiple assembly tools (SPAdes || Unicycler || minia) Blast to reference genome (blastn...870 days ago
- Downloading 16S rRNA databases can be crucial for various bioinformatics analyses, especially in microbiome resear...are tools. NCBI 16s RNA database location ftp://ftp.ncbi.nih.gov/blast/...
4 days ago
