Results for "BLAST Parser"
News
NCBI team released a new version of IgBLAST with four new improvements. IgBLAST is a popular NCBI package for classifying an...as -V_penalty to be consistent with other IgBLAST penalty options. ...use VK and rat VH germline genes. IgBLAST...1567 days ago
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
MCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) wit...parate rRNA/ITS databases section on the nucleotide BLAST page for these targeted seque...ence material You can also download these from the BLAST...1537 days ago
- BLAST team added a new feature (Max 3' match), shown in Figure 1, to Primer-BLAST that limits the length of 3' exon matches when designing exon-exon... If you have any questions or concerns, please contact blast-...
1472 days ago
Blast on Docker, Google Cloud, Amazon Cloud
As announced in a previous post, we offer a Docker version of NCBI BLAST+ that you can use locally or on...d where we have pre-loaded BLAST databases. We are happy...tion, we now offer 23 different BLAST databases on each cloud platf...tools in your pipelines. NCBI BLAST...1400 days ago
IgBLAST 1.17 is now available with improved identification of productive V gene sequences
A new release of IgBLAST (1.17), the popular package for classifying and anal...a new field , “V frame shift”, to the IgBLAST output to indicate whether th...ose with internal frame shifts. See the new IgBLAST...1284 days ago
BLAST+ 2.11.0 release is now available on FTP site !
BLAST+ 2.11.0 release is now available from our FTP site. The main advance is...e usage reports to NCBI to help us improve BLAST. This information is limited to the name of the BLAST program, some basic database...ture allows threading by query batch in rpsblast/...1271 days ago
NCBI BLAST have added new columns to the Descriptions
NCBI BLAST have added new columns to the Descriptions Table for web BLAST output. The new columns are Scientific Name, Common Name, Taxid...rom the display Your preferences will be saved for your next visit to BLAST,...1254 days ago
NCBIBLAST+ 2.14.1 now available
#NCBIBLAST+ 2.14.1 now available with improved documentation, faster and more r...ges they made. They added the cleanup-blastdb-volumes.py script to remove unused BLAST database volumes. Read the do...ing data from the NCBI with the update_blastd...253 days ago
- Update! Assembly and Genome record pages now redirect to new NCBI Datasets pages. NCBI Datasets is a new resource ...genomes and provide links to related NCBI tools such as Genome Data Viewer and BLAST....
301 days ago
Cleaner BLAST Databases for More Accurate Results
Do you use BLAST to identify a sequence or the evolutionary sco...nd misclassified sequences are in the BLAST databases and show up in your...ault nucleotide (nt) and protein (nr) BLAST databases. Foreign...s.ncbi.nlm.nih.gov/2024/04/22/cleaner-blast-...16 days ago
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