Results for "BWA"
Blogs
Software and Tools to detect structure variation with long reads !!
...e from split-read alignments, high-mismatch regions, and coverage analysis. Please note the current version of Sniffles requires sorted output from BWA-MEM (use -M and -x parameter)...2600 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...tring graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool https://github.com/lh3/bwa GraphMapMapper for long and...2313 days ago
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Bookmarks
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...ignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg2...1139 days ago
- ...alling and annotation pipeline developed at the Victorian Life Sciences Computation Initiative (VLSCI), University of Melbourne. It is based around BWA, GATK and ENSEMBL and was ori...
3645 days ago
- +12 more Bookmarks
Files
- ...r: fail to open file './temporarySam' [bwa_aln_core] write to the disk... 0.09 sec[bwa_aln_core] 70778880 sequences....[main] Version: 0.7.15-r1140[main] CMD: bwa aln -t 30 all_p_ctg.fa -[main...ng the SA coordinates of the reads using BWA aln...[Thu Jun 14 18:58:37 20...
2144 days ago
Top-level pages
Next generation sequencing in R or bioconductor environment
...quickly becoming a universal standard alignment format, and is now supported by a wide variety of alignment tools. Documentation Samtools Website BWA (Burrows-Wheeler Alignment) W...3617 days ago
Commercial and public next-gen-seq (NGS) software
...Written by Ben Langmead and Cole Trapnell. Linux, Windows, and Mac OS X. BWA - Heng Lee's BWT Alignment program - a progression from Maq. BWA is a fast light-weighted tool...3511 days ago
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Wire posts
Opportunity posts
- ...he applicant should have knowledge of the following: Programming: Perl and Python. Operating system: Linux and Windows. NGS Analysis tools: Maq, BWA, Bowtie, SAM tools, BEDTools,...
3158 days ago
Bio-Scripts
Mapping with BWA-mem or BWA-sampe in one go with python script !
...T provides a script (https://github.com/ksahlin/BESST/blob/master/scripts/reads_to_ctg_map.py) for obtaining sorted and indexed BAM files with BWA-mem or BWA-sampe in one go. An example c...2116 days ago
Long reads mapper bash script !
...minimap2Loc=/home/urbe/Tools/minimap2-2.3_x64-linux/minimap2 bwaMemLoc=/home/urbe/anaconda3/bin/bwa ngmlrLoc=/home/urbe/Tools/ng...mapping $fileName, present at $refFasta" if [ $toolName == "bwa" ]; then echo "Mapping wi...2115 days ago
- +12 more Bio-Scripts
Comments
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draft.fa re...2092 days ago
Comment on "Alignment of closely related whole genomes/scaffolds"
...: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334 In my works, I have also used BWA-SW, BLAT and LASTZ. However,...3011 days ago
- +1 more Comments
