AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
...is. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM...2110 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...alyzing the diversity within the class Negativicutes, represented by 31 genomes including 10 genera. The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, pro...2094 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a very fast...1985 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of Genomi...1984 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)1977 days ago
1964 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...tarting with data quality control, through to building contigs and analysis of the results. At the end of the lab you will know: How to perform basic quality checks on the input d...1944 days ago
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filtering, ded...1944 days ago
1548 days ago
Far Manager Commands and Links !
...ecessary actions: viewing files and directories; editing, copying and renaming files; and many other actions. https://www.farmanager.com/ Basic instruction at https://conem...1424 days ago