Results for "Bayesian algorithm"
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Edit distance application in bioinformatics !
There are other popular measures of edit distance, wh...; print "@distances"; # prints "2 0 3" use Algorithm::LCSS qw( LCSS CSS CSS_Sorted...ein::XS are both versions of the Levenshtein algorithm that require a C compiler, bu...2352 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$...Calculate GCM of numbers 20 and 35 using Euclid's algorithmperl -le '$n = 20; $m = 35; ($...# Find and print all permutations of a listperl -MAlgorithm::Permute -le '$l = [1,2,3,4,5...2313 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improv...compatible http://www.htslib.org/ SEWAL Uses a locality-sensitive hashing algorithm to enumerate all unique seque...2295 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "G...ll genome, just the 100 kb part you're interested in. I suggest the following algorithm: 1. Start with the initial...2176 days ago
Ancestral sequence reconstruction steps !
...fulfilled in the post-genomic era. Thanks to the improvement of algorithms and of better sequencing an...nferences phylogenetic... 5- Perform phylogenetic tree, used Bayesian Inference with Molecular Clock...2190 days ago
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. ...task_options.min_length: 50 Pbalign.task_options.algorithm_options: --minMatch 12 --bes...veAsm_bool: false Genomic_consensus.task_options.algorithm: best falcon_ns.task_options...1297 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the mitochondrial genome...nomes, including mitochondria. It utilizes a seed-and-extend algorithm and is suitable for both shor...253 days ago
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