Results for "Bioinformatics Jobs"
Blogs
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240...flow shown above). This will build a DAG of the jobs to be run without actually ex...ke file in order to produce an image of the DAG of jobs to be run. snakemake --dag...946 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignme...889 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &b...pression of FASTQ files, Bioinformatics, 2014; 30(15):2213&ndash...for raw sequencing data, Bioinformatics, 2018; 34(16):2748&ndash...ating k -mer statistics, Bioinformatics, 2017; 33(17):2759&ndash...875 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compar...analysis of genomic sequences. cBARBEL -- Catfish Breeder and Researcher Bioi...689 days ago
- SLURM commands The following table shows SL...queue View information about jobs located in the SLURM scheduli...on about running and finished jobs sacct View resource acc...nList all currently submitted jobs in running and pending states...o get statistics on completed jobs by jobID: sacct --...
681 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 2. Parall...553 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known as...uences from various organisms. These are just a few examples of the many bioi...436 days ago
Bioinformatics Tools for Phylogeny !
Direct access to the individual tools available on this server. Multiple Alignment:Phylogeny:Tree viewers:Utilities: MUSCLE PhyML TreeDyn Gblocks T...193 days ago
- Downloading 16S rRNA databases can be crucial for various bioinformatics analyses, especially in microbiome research. However, it's important t...to Microbial Ecology): QIIME (https://qiime2.org/) is a widely used bioi...
23 days ago
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