Results for "Bioinformatics Scripts"
Blogs
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis,...zhiyang2 012/WGDdetectorhttps://bmcbioinformatics.biomedcentral.com/articles/10...:// github.com/arzwa/wgdhttps://bmcbioinformatics.biomedcentral.com/articles/10...e, you need to register at http:// bioinfo...1164 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong S...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...z, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...1055 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile t...ry for storing the conda environments that the workflow will use. scripts = directory for storing pytho...942 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignmen...885 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &b...pression of FASTQ files, Bioinformatics, 2014; 30(15):2213&ndash...for raw sequencing data, Bioinformatics, 2018; 34(16):2748&ndash...ating k -mer statistics, Bioinformatics, 2017; 33(17):2759&ndash...872 days ago
List of comparative genomics resources !
...equences Search for Indices of gene and transcripts in human and mouse. DroSpeGe --...OPTIC -- orthologous and paralogous transcripts in clades Browse complete ge...cBARBEL -- Catfish Breeder and Researcher Bioinformatics Entry Location Find i...686 days ago
- SLURM commands The following table shows SLURM co...ription sbatch Submit batch scripts to the cluster scancel...CPUs on the running nodes.2. Submit scriptsThe header in a submit script...multiple nodes - see sbatch sample scripts in directory /usr/local/...
677 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 2. Paralle...549 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known a...ences from various organisms. These are just a few examples of the many bioinfo...433 days ago
Bioinformatics Tools for Phylogeny !
Direct access to the individual tools available on this server. Multiple Alignment:Phylogeny:Tree viewers:Utilities: MUSCLE PhyML TreeDyn Gblocks T-...189 days ago
