Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong S...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...z, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...1055 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignm...885 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &b...pression of FASTQ files, Bioinformatics, 2014; 30(15):2213&ndash...for raw sequencing data, Bioinformatics, 2018; 34(16):2748&ndash...ating k -mer statistics, Bioinformatics, 2017; 33(17):2759&ndash...871 days ago
List of comparative genomics resources !
...ase to Compare Structural and Functional Annotations of Proteins between S...s full genome comparisons and functional analysis. MBGD --...sis Tool Conduct genome wide functional and structural analysi...atfish Breeder and Researcher Bioinformatics Entry Location Fi...685 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 2. Paral...549 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known as...uences from various organisms. These are just a few examples of the many bio...433 days ago
Bioinformatics Tools for Phylogeny !
Direct access to the individual tools available on this server. Multiple Alignment:Phylogeny:Tree viewers:Utilities: MUSCLE PhyML TreeDyn Gblocks...189 days ago
19 days ago