BOL

Results for "Biological Networks"

Bio-Scripts

• • Radha Agarkar@radhaagarkar

  

  Needleman-Wunsch Algorithm in Perl

  #!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-Wunsch global alignment algo (G...

  2904 days ago

• • Priya Singh@priyasingh

  

  Implementation of biological random mutation with Perl

  #!/usr/bin/perl -w use strict; use warnings; #sequence for a better recognition my $DNA="AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA \ n";...

  2900 days ago

• • Rahul Nayak@rahul

  

  Biological Sequence handling with Perl !

  package Sequence::Generic; # File: Sequence/Generic.pm use strict; use Carp; use overload '""' => 'asString', 'neg' => 'reverse', '.'...

  2180 days ago

• • Jit@jit.aber

  

  Fastq-dump for SRA download

  ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./...set --skip-technical Dump only biological reads OUTPUT -O|--outd...pairs: First biologic...

  2125 days ago

• • Jit@jit.aber

  

  Installing docker for Bioinformatics on Ubuntu !

  jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io c...Manage the docker engine image Manage images network Manage networks node Manage Swarm n...

  1512 days ago

• • Jit@jit.aber

  

  Basic docker commands !

  jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE...system prune WARNING! This will remove: - all stopped containers - all networks not used by at least one cont...

  1508 days ago

• • Surabhi Chaudhary@surabhi

  

  Extract the sequence by IDs !

  #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biologic...

  1401 days ago