Results for "Bit"
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...shared libperl 5.8, 5.10, 5.12, 5.14, 5.16Supported Operating Systems MS Windows XP and later 32 and 64 bit. Linux 32 and 64 bit - minimum glibc 2.5, GTK+ 2.1...3917 days ago
Barrnap: Bacterial ribosomal RNA predictor
...s input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. NHMMER binaries for 64-bit Linux and Mac OS X are includ...2550 days ago
YASS :: genomic similarity search tool
...nsitivity (transition mutations are purine to purine [A<->G] or pyrimidine to pyrimidine [C<->T]) using different scoring schemes with bit-score and E-value evaluated a...2925 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/g...2905 days ago
- ...WA-SW across all SV classes, and especially excels at complex SVs comprising multiple breakpoints. Availability: YAHA is currently supported on 64-bit Linux systems. Binaries and s...
2662 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...of the genome. E-value. Meaningful mapping quality. Various alignment strategies (semiglobal bit-vector and Gotoh, anchored).&...2524 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improve...2283 days ago
minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining, and SIMD-parallel Smith-Waterman-Gotoh extension.2173 days ago
Genome Annotation using MAKER tutorial !
...lla organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to wrap my head com...1963 days ago
k-mers tutorial - classification and taxonomy
...;ahem area of interest recently, if you read into our papers a bit. In this blog post I'm going to fix this by doing a little bit of a literature review and wa...983 days ago
