Results for "Bonobo and Neandertal genome sequencing"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as th...r or gcc in general, pthreads,and zlib l...ler 20160120 – Scalable and Accurate Targeted Gene Assembly Tool...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...2692 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end...ey can be mapped to the reference genome as...rdquo;: (a) mapped to opposing strands where the upstream read is mapped to the forward strand and the downstream read is mappe...n only be mapped to the reference genome by...2529 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner...l.net), Mac OS X GUI app, command line tool, Perl modules and A...utilities for Next-Generation Sequencing (NGS) data analysis masukomi...Framework for High Throughput Sequencing analysis gbarr/perl-libnet&n...2496 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ction Lighter Correction of sequencing errors in raw, whole genome sequencing reads (k-mer based) Soft...rence-free SNP identification and estimation of phylogenetic trees usi...ol for MLST directly from the genome sequencing reads Software (Pytho...2378 days ago
- When you have both Illumina and Nanopore data, then SPAdes remain...y This produces: SPAdes genome assembler v3.10.1 Usage...file with interlaced forward and revers...to reduce number of mismatches and short indels --continue...the de bruijn graph(s) - 31, 51 and 71 on...
2357 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since M...y human islet cell signatures and reveal...es in type 2 diabetes http://genome.cshlp.org/content/early/2016/...56605/SLICER SinQC: A Method and Tool to Control Single-cell RNA-seq...2357 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single an...rol, read alignment, quantification of gene and transc...functional analysis, gene fusion detection and eQ...limma, Glimma and edgeR Differential gene and transcript...
2357 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the be...ation (if you have only a few genomes to annotate). Prokka – Standalone c...2338 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is diff...n with ordinary mapping. If a genome (say, human) contains an exac...y are ambiguous between human and mouse. BBSplit tracks this addit...was contaminated with e.coli and salmon...2321 days ago
List of visualization tools for genome alignments
...quences derived from multiple sequencing technologies. Low- or high-depth read pileups and easy visualization of putative s...quences in an entire Illumina sequencing run http://www.sourceforge.n...bsp; Software for annotating and visualizing sequenced human genomes http://www.svaproject.org View...2290 days ago
