Results for "CANU"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
...//github.com/jts/nanopolish PBcRHGAP or BLASR, Celera OLC PBcR correctorhttp://wgs-assembler.sourceforge.net/wiki/index.php/PBcR –CanuMHAP, Celera OLC Canu correctorhttps://github.com/m...2325 days ago
CANU genome assembly parameters !
...the appropriate parameters to run Canu and run it. The assembly will...;| stands for "or". usage: canu [-correct | -trim | -assemble...ad_file.fastq.gz A default Canu run produces usually hig...e containing the assembly graph by Canu *.contigs.fasta : file...1949 days ago
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Bookmarks
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed...el, feel free to use and report issues encountered. Canu is a hierachical assembly pip...;documentation New release https://github.com/marbl/canu/releases2918 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the...2359 days ago
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Top-level pages
Bioinformatics tools for genome assembly !
...e and complex genomes. MaSuRCA: A hybrid assembler that combines data from multiple sequencing technologies, such as Illumina and PacBio. Canu: A long-read assembler optimi...290 days ago
Wire posts
Bio-Scripts
- ...20-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 canu Collecting package metadata...201901 Proceed ([y]/n)? y Downloading and Extracting Packages canu-1.4 | 7.0 MB |...
1059 days ago
Tags
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in fo...Tags: Bioinformatics, FASTQ, NGS, Assembly, Genome, CANU, Assembler, Tool, Software
2918 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like to disable cluster option, since we compute on a single Amazon server set off the option to compute on cluster useGrid=false...Tags: CANU, genome, assembly, parameters, NGS, LongReads, OLC
1949 days ago
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Comments
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1954 days ago
- ➜ bin git:(master) ✗ ./canu usage: canu [-version] [-citation] \ [-correc...rected] file1 file2 ... example: canu -d run1 -p godzilla genomeSiz...aw reads/*.fasta.gz To restrict canu to only a specific stage, use...NOT be used to set memory limits; Canu will do that for you. minRead...
2103 days ago
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