2802 days ago
Structural variation: the hidden genomic treasure
...notyping and understanding of CNVs is lagging behind due to muc...s are copy number variations (CNVs) which can be generated by s...cting copy number variations (CNVs). These technologies have en...have been documented. Tools CNVnatora tool for CNV discovery...2702 days ago
2297 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...epth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region g...1630 days ago
Commercial and public next-gen-seq (NGS) software
...Sciences Centre. Python/Win or Linux. Counting e.g. CHiP-Seq, Bis-Seq, CNV-Seq BS-Seq - The source code...Seq - Program used by Johnson et al. (2007) in their Science publication CNV-Seq - CNV-seq, a new method t...3518 days ago
Apps for Busy Bioinformatics Researchers !!!
...SS feeds for journals Query GeneRIF interactions, COSMIC mutations, and CNV data for cell lines. Does no...ntaining cell lines can be queried for mutations. Copy Number Variation (CNV) plots from cell lines profil...3540 days ago
3947 days ago
Create random 10000 SNPs in genome !
...21] Starting simuG .. [Sun Jan 10 16:05:57 2021] Check specified options .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversion/translocation simul...1210 days ago
Create random 1000 INDEL in genome !
...21] Starting simuG .. [Sun Jan 10 16:14:00 2021] Check specified options .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversion/translocation simul...1210 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nano conference https://publications.nanoporetech.com/2016/06/05/london-calling-talk-sara-goodwin-cshl-rapid-cnv-characterisation-of-clinical-cancer-samples-on-the-oxford-nanopore-minion/2889 days ago