3d-dna: 3D de novo assembly (3D DNA) pipeline
...ine uses tools and methods from Juicer (Durand & Shamim et al., Cell Systems, 2016) and Juicebox (Durand & Robinson et al., Cell Systems, 2016), as well as ad...2320 days ago
SciLifeLab tutorial for bioinformatics analysis !
...- Uppsala2017 November - UppsalaRNAseq tutorials R Programming Foundations for Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017...2210 days ago
2083 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing re...1945 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
...and structural variants (SVs) simultaneously with a single simple model. More at https://kevlar.readthedocs.io/en/latest/ https://www.cell.com/iscience/pdf/S2589-0042(1...1559 days ago
1543 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
...embler. It is designed for the following sequencing data types: single-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell RNA-seq (strand-specific/agno...1396 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...edicting TFs and cofactors that drive gene changes in 4 settings: 1) A cell line expressing or lacking si...or mice lacking a single TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons di...1256 days ago
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