3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes...thods from Juicer (Durand & Shamim et al., Cell Systems, 2016) and Juicebox (Durand & Robinson et al., Cell Sys...2334 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Cours...ations for Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA...2225 days ago
2098 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based...1959 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a ref...del. More at https://kevlar.readthedocs.io/en/latest/ https://www.cell.com...1574 days ago
1558 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for...ngle-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell RNA...1411 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Contr...ctors that drive gene changes in 4 settings: 1) A cell line expressing or lacking si...gle TF in a particular neuronal subtype 4) Single cell RNA...1270 days ago
1213 days ago
684 days ago