3519 days ago
1290 days ago
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application note desc...xpression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor infor...3191 days ago
Calling narrow and broad peaks from ChIP-Seq data
...peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Rohit G...3191 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add you...3481 days ago
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10Gb...1133 days ago
3915 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2679 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the extent...3937 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...21:2224-2241, 2011 Full Text Chromatin immunoprecipation analysis: ChIP-seq ChIP-seq: advantages and challenges of...ver-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq software...3773 days ago
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and the International Sheep Genomics Consortium (ISGC) are to...3890 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 2009) /Pahview (Luo and Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gene-set analysis. The gage package (2....3827 days ago
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers University of Technology and the University of Gothenburg has about 170 faculty and...3941 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
Bio-IT World and Cambridge Healthtech Institute's fifth international Clinical Genomics & Informatics Europe conference will feature four main tracks on Clinical Exo...3911 days ago
3884 days ago
2957 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2911 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
#!/usr/bin/perl -w my $usage="\nUsage: $0 [-h] [-m char] [fastaFileName1 ...]\n". " -h: help\n". " -m: missing character\n". "Print out the name of s...2908 days ago
3939 days ago
ArrayGen Bioinformatics Genomics Group
ArrayGen is a global bioinformatics company which is a one stop solution for microarray designing and genomics data analysis. Our novel Array Design Approach Strategy (ADAS) aims to condense the time lag between demands of scientific community and manufacture industry, thereby expediting research...Tags: Bioinformatics, Genomics, NGS, Microarray, Chip-Seq, RNASeq, Genome Assembly, DNA Methylation, Personalized Genomics, Biotechnology
3500 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract3542 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my versi...3616 days ago