Results for "ChIP-seq"
Users
Skills: ChIP-seq pipeline tools3540 days ago
- Brief description: genome annotation, transcriptome, RNA-seq, ChIP-seq, ChRIP, PARCLIP, cancer, noncoding, long-noncoding RNAS, epigenetics
1311 days ago
Blogs
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application note desc...xpression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor infor...3212 days ago
Calling narrow and broad peaks from ChIP-Seq data
...peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Rohit G...3212 days ago
- +8 more Blogs
Bookmarks
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add you...3502 days ago
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10Gb...1154 days ago
- +66 more Bookmarks
Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again I...
3936 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2700 days ago
- +1 more Pages
Top-level pages
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the extent...3958 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...21:2224-2241, 2011 Full Text Chromatin immunoprecipation analysis: ChIP-seq ChIP-seq: advantages and challenges of...ver-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq software...3794 days ago
- +15 more Top-level pages
Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and the International Sheep Genomics Consortium (ISGC) are to...3911 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 2009) /Pahview (Luo and Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gene-set analysis. The gage package (2....3848 days ago
- +9 more News
Opportunity posts
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers University of Technology and the University of Gothenburg has about 170 faculty and...3962 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
Bio-IT World and Cambridge Healthtech Institute's fifth international Clinical Genomics & Informatics Europe conference will feature four main tracks on Clinical Exo...3932 days ago
- +29 more Opportunity posts
ResearchLabs posts
- ...onment interactions by automated phenotyping, using image analysis, machine learning, sparse model building and causal inference. DNA-, RNA- and ChIP-Seq and their applications to gen...
3905 days ago
- ...ools for the analysis of high dimensional data arising from "Multi-omics" applications. In particular, current activities involve the analysis of ChIP-seq and RNA-seq experiments....
2978 days ago
- +2 more ResearchLabs posts
Bio-Scripts
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2931 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
#!/usr/bin/perl -w my $usage="\nUsage: $0 [-h] [-m char] [fastaFileName1 ...]\n". " -h: help\n". " -m: missing character\n". "Print out the name of s...2929 days ago
- +55 more Bio-Scripts
Groups
Python is a programming language that lets you work more quickly and integrate your systems more effectively. Python is an easy to learn, powerful programming language....3960 days ago
Tags
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: h...Tags: Encode, UCSC, genome browser, Sequencing, RNA-Seq, Chip-Seq, Epigenomics, Methylation, histone modification, regulatory elements, HMM
3720 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverability of the TF binding motif, accuracy of TF-DNA binding detection, the sensitivity of inferred TF-DNA bindin...Tags: ChIPulate, Python3, framework, simulate, read, counts, ChIP-seq, experiment
1882 days ago
Comments
Comment on "Commercial and public next-gen-seq (NGS) software"
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract3562 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my versi...3637 days ago
- +3 more Comments
