2181 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...ation("PureCN")): Riester M, Singh A, Brannon A, Yu K, Campbell C, Chiang D, Morrissey M (2016). “PureCN: Copy number calling and SNV classification using targeted short read seq...2095 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
...eep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike other demultiplexers...1985 days ago
1965 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1815 days ago
Retrieving Taxonomic Information with R
...val. Specifically, the taxonomy() function implemented in myTAI can be used to classify genomes according to phylogenetic classification into Phylostrata (Phylostrati...1710 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
...t does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike other demultiplexers...1545 days ago
CLARK: Fast, accurate and versatile sequence classification system
...ased on a supervised sequence classification using discriminative k-m...idering two distinct specific classification problems (see the article for...ls), namely (1) the taxonomic classification of metagenomic reads to known...genome), CLARK outperforms in classification speed and precision the best...1540 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...uite will perform various steps in metagenomic analysis workflows including data pre-processing, metagenome assembly, taxonomic and functional classification, genome binning, and gene ass...1486 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...(CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and met...of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG ba...1447 days ago