Results for "Closing"
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...undant contigs from an initial de novo assembly scaffolding: joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is: fast ...2817 days ago
- ...with large rearrangements ie. deletions, insertion, inversions, translocations. Note however, this is experimental implementation! Consider closing gaps after scaffolding....
2707 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...loped: ABACAS, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in assembled genomes usi...2563 days ago
- ...gions of scaffolds, thereby achieving accurate and efficient gap closure. We demonstrate with sequencing data from various organisms that the gap-closing accuracy of GMcloser is 3–100...
2169 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...you use this program in a publication, please cite the following reference:Chong Chu, Xin Li, and Yufeng Wu. "GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Sh...2197 days ago
- ...her tools. This pipeline also implements flexible and sensitive assembly error detection, a hierarchical scaffolding procedure and a reliable gap-closing method for haploid sub-assemb...
2061 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or...1465 days ago
