Results for "Cluster"
Users
Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .2928 days ago
Blogs
List of bioinformatics workflow management tools !
...scribing analysis workflows and tools that are portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance...1145 days ago
List of gene ontology software and tools
...I (Department of Pathology, UT Southwestern Medical Center) CLASSIFI (Cluster Assignment for Biological Inf...nce) is a data-mining tool that can be used to identify significant co-clustering of genes with similar func...3713 days ago
- +7 more Blogs
Bookmarks
A simple tutorial for a complex ComplexHeatmap
...ory. install and load required packages require(RColorBrewer) require(ComplexHeatmap) require(circlize) require(digest) require(cluster) If all load successfully,...1132 days ago
- ...method, Centurion, that jointly infers the locations of all centromeres in a single yeast genome by exploiting the centromeres’ tendency to cluster in 3D space. We first demonst...
3008 days ago
- +18 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...nome, correcting sequencing errors by locally clustering reads in small windows of...es some of the ideas introduced by Phusion on clustering treecat – Phylogene...ulti-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its...2689 days ago
Awesome perl frameworks, libraries and software - PART 3
...ration) of procedures including t-test, linear regression, and k-means clustering. CPAN-API/metacpan-client...o-pdf/(e)book toolchain happiness and sustainable productivity. duncs/clusterssh - Cluster SSH - Clust...2497 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ome in less than 6 days using 54 Gb of RAM and a 123-processor compute cluster for calculation of an FM-inde...2011. Full Text, Home Page Rainbow: an integrated tool for efficient clustering and assembling RAD-seq rea...3782 days ago
List of In-silico Binding Site Prediction Tools
...anchor residues, but hot regions, defined by clusters of residues, at the interfac...onservation, are available to screen and sort clusters of residues. PocketQuery was...with depth factors followed by a depth based clustering that uses neighbourhood in...3747 days ago
- +4 more Top-level pages
Wire posts
News
- ...Univ. Pune]5. ab initio methods; Classification of Basis Sets; Configuration Interaction; Møller–Plesset perturbation theory; Coupled Cluster theory; Solvation Models; Con...
3832 days ago
Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Gen...3952 days ago
Complex Systems: From Physics to Biology October 15-16 2013 at JNU Convention Center
...In particular, applications of the concepts of physics to biological sciences will be the major theme of this meeting. Selected Topics: Cluster Dynamics Non-equilibrium...3880 days ago
- +4 more Opportunity posts
ResearchLabs posts
- ...(SDU). It emerged from the Computational Systems Biology group, founded in March 2010 at the Max Planck Institute for Informatics (MPII) and the Cluster of Excellence for Multimodel...
3913 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...e genomes, by comparing them with those of other organisms. The Sakakibara Lab uses a next-generation sequencer at Keio University, along with a cluster machine with hundreds of CPUs...3920 days ago
Bio-Scripts
- ...6%] Building CXX object src/CMakeFiles/sniffles.dir/plane-sweep/PlaneSweep_slim.cpp.o [ 77%] Building CXX object src/CMakeFiles/sniffles.dir/cluster/Cluster_SVs.cpp.o /home/urbe/Tools/n...
2102 days ago
- ...K: run using spark-submit on an existing cluster --spark-ma...ill be passed to dataproc --cluster must be specified after the...t block is well-formed; RC 100 otherwise ClusterCrosscheckMetrics (Picard)...
2078 days ago
- +4 more Bio-Scripts
Tags
- SLURM workload manager software, a free open-source workload manager designed specifically to satisfy the demanding needs of high performance computing. This page is a HOWTO guide for setting up a SLURM installation, currently focused on a CentOS 7 Linux OS. Please send feedback to Ole.H.Nielsen...
Tags: Bioinformatics, Server, Cluster, Batch, SLURM, Tutorial
2926 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Guangchuang Yu <guangchuangyu at gmail.com>...
Tags: Bioinformatics, clusterProfiler, GO, R, Package, Omics, Genes, Cluster
2882 days ago
Comments
Comment on "LAMSA: fast split read alignment with long approximate matches"
...ngth of SV. [10000] -v --ovlp-rat [FLOAT] Minimum overlapping ratio to cluster two skeletons or alignment re...-s --max-skel [INT] Maximum number of skeletons that are reserved in a cluster. [10] -R --max-reg [INT] Maxi...2126 days ago
- ...though you can turn this off. However, large assembly jobs are best run in parallel, making HPC integration essential. This can get tough if your cluster has a non-standard configurat...
2178 days ago
- +1 more Comments
