Results for "Code Search"
Blogs
Install ImageMagick from Unix Source
ImageMagick builds on a variety of Unix and Unix-like operating...inux ld.sochecking how to hardcode library paths into programs.....inux ld.sochecking how to hardcode library paths into programs.....nochecking for flif_create_decoder in -lflif... nochecking if F.../Blob.h Magick++/lib/Magick++/CoderI...2159 days ago
Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified b...2129 days ago
List of motif discovery tools !
In genetics, a sequence motif is...conserved protein sequences Search for ungapped segments corresp...Catalytic-mechanism Database Search for information related to th...n sequences. O-GLYCBASE Search for information about glycopr...ns. The EMOTIF database Search for highly conserved and spec...2006 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24...mdd_hhmmss) Instrument Serial Number SMRT Cell Barcode Set Number (a.k.a. "Look Num...p;using polymerase read coordinates) readScore barcodeSc...2003 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like...1958 days ago
- ...here you put all # the preliminary set-up code, before you process any text...rely heavily on regular expressions. # Search and replace, first instance (...# localvar => "m..t m. at th. bar" # Search for a string that matches a r...
1849 days ago
- This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi....his: delnodes.dmp division.dmp gencode.dmp merged.dmp names.dmp n...(superkingdom, kingdom, ...) embl code -- locus-name prefix; not...1 or 0) -- 1 if node inherits genetic code f...
1561 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n Forces your line to be called in a loop. Allows you to take lines from the di...1394 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...in virtually any biological research because of the relevance of...s function trims adapters, barcodes and other contaminants from th...uve assembly metrics - http://code.google.com/p/ngopt/wiki/How_To_...e - http://www.jcvi.org/cms/research/projects/annotation-service/...1217 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioi...have heard many times during the job-search process. There is no reason f...goals / What are the plan for your research fundings ? Your CV/resume ha...ions of how you want to extend your research and create your own projects...1211 days ago
