Results for "Code Search"
Bio-Scripts
Exit Bash Script When Any Command Fails
This can actually be done with a single line using the set builtin command with the -e...ript to exit if any commands return a non-zero exit code. set -e #all other comma...'echo "\"${last_command}\" command filed with exit code $...1538 days ago
Installing docker for Bioinformatics on Ubuntu !
...e or more images to a tar archive (streamed to STDOUT by default) search Search the Docker Hub for images...Block until one or more containers stop, then print their exit codes Run 'docker COMMAND --help'...1531 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit...Lost password ActivityNewsOpportunityResearchLabsQuestionsPagesDiscussionMo...wo organisms appear to share a core set of genes. Researchers have also found that two-t...1529 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro...* Redistributions of source code must retain the above copyrig...n also contains Visual Studio Code software binaries from Mi cr...and Microsoft's Visual Studio Code software is classified by M...h7725739_2 ... installing: pycodest...1529 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract; # # Firs...ov/pub/taxonomy/taxdump.tar.gz'; my $file = 'taxdump.tar.gz'; my $code = getstore($url, $file); #print $code;...1178 days ago
- blastpgp arguments: -d Database [String] de.../F] default = F -Y Effective length of the search space (use zero for the real...I-BLAST Restart [File In] Optional -l Restrict search of database to list of GI's [...
968 days ago
Installing Covid19 Environment !
...############################################## | 100% font-ttf-source-code | 684 KB | ###############...ction in metagenomic datasets) * BUSCO tools and databases (needed for searching BUSCO genes) -- works in L...941 days ago
Run Pango on your multifasta file !
#More at https://cov-lineages.org/resources/pangolin/usage.html (base) [jnarayan@hn1 FASTA]$ conda activate pan...ifier from version 0.24.2 when using version 1.0.1. This might lead to breaking code o...905 days ago
Omicron Sequences accession number !
EPI_ISL_6647956 EPI_ISL_6647957 EPI_ISL_6647958 EPI_ISL_6647959 EPI_ISL_6647960 EPI_ISL_6647962 EPI_ISL_6647961 Search the IDs in https://www.epicov.org/epi3/frontend903 days ago
- #R is a feature rich interpretive programming language originally released in 1995. It...first would need to download and extract the source code. Next we’d configure the inst...additional packages easier. We’ve commented out the code b...
841 days ago
