Versatile genome assembly evaluation with QUAST-LG
...; package starting from version 5.0.0 (download the latest release). Run QUAST as usual and do not forget to add ‐‐large option to your command! A short list of the new fea...1975 days ago
NanoPack: visualizing and processing long-read sequencing data
...Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools....1971 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-...1953 days ago
1953 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...the genome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be customized to any set of reads at the command line using VariantBam&nb...1944 days ago
1944 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you c...1661 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
...read data. However, it operates on FASTA files, not the GFA graphs that miniasm makes. That's where Minipolish comes in. With a single command, it will use Racon to polish...1629 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinis...1577 days ago
BlobToolKit: A toolkit for genome assembly QC
...interactive visualisation and filtering of preliminary or published genomic datasets even for highly fragmented assemblies. BlobTools2 is a command-line program to convert assem...1549 days ago