Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and anal...nctional impacts of SNPs. Database entries represent nsSNPs in dbSNP and 1000 Genomes collection, as well as varian...3540 days ago
Software packages for next gen sequence analysis
.... A suite created by the 1001 Genomes project. Source for POSIX. *...s. A tool created by the 1001 Genomes project. Source for POSIX. *...nology, back to the reference genomes, and carry out post-analysis....-Seq reads to mammalian-sized genomes using the ultra high-throughp...3241 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a...://kpv.kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.j...2285 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nce Haplotypes: Links to 1000 Genomes and HapMap downloads Output:...sion should work with diploid genomes Input: requires BAM files (a...mal-tumor pair and two parent genomes; quantifies descent-by-modifi...ata from ClinVar, dbSNP, 1000 genomes (plus many other external sit...2907 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly r...2210 days ago
2867 days ago
Genome Assembly Tools and Software - PART1 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. TriMetAss 1.2 – The Tri...f different data types– Comparative assemblies InteMAP...specifically intended for metagenomes. Contiguity 1.0.4 &ndash...2684 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a scri...;- perl module that provide any growl application LyonsLab/coge - CoGe (Compara...2488 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-...g long sequence (e.g., ONT or PacBio reads, draft genomes) Software (Perl) https://gi...ification of metagenomic reads to known bacterial genomes using k-mer search and L...2369 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the ...level for each gene across a large population of input cells Useful for compara...2349 days ago