Results for "Comparative Genomes"
Top-level pages
Tools for bacterial whole genome annotation
...y useful if you have loads of genomes or need to annotate a pangeno...notate bacterial and archaeal genomes (chromosomes and plasmids)....fferent annotations of single genomes. The extended annotation assi...ission-ready, annotated draft genomes. MyPro installed as a virtual...2330 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains...2313 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final re...But sometime, we need publication ready figure of genomes. Following are the list of ge...re for annotating and visualizing sequenced human genomes http://www.svaproject.org V...2282 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on...jects.org/ repeat-match http://mummer.sourceforge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bur...2272 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betwee...and provide novel function. Following are the popular tool to detect HGT in genomes: T-REX / 3.22 HGT...848 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement brea...sco SAGE: String-overlap Assembly of GEnomes | BMC Bioinformatics | Full T...ler based on the FMD-index for large genomes https://github.com/lh3/fermi...karyoploter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://b...2240 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in...Study of 10 tools on five datasets that such a comparative evaluation of these tools is...ols, which may lead to overly optimistic results. Compara...2201 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapF...sembly approach to fill the gap within paired reads" or "Toward almost closed genomes with GapFiller". There are al...2163 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools av...e-cell and multi-cell bacterial genomes, as well as small eukaryotic genomes. ABySS: A parallelized a...or assembling large and complex genomes. MaSuRCA: A hybrid assem...able for small and medium-sized genomes. Unicycler: A hybrid ass...284 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are speciali...a pipeline to assemble mitochondrial genomes and annotate mitochondrial ge...iterative assembly of mitochondrial genomes. It starts with a reference m...ed for de novo assembly of organelle genomes, including mitochondria. It u...241 days ago
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