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EXCAVATOR: detecting copy number variants from whole-exome sequencing data
...ov model algorithm and a calling method that classifies genomic regions into five copy number states. We validate EXCAVATOR on three datasets and compare the results with three other...1946 days ago
GffCompare: Program for processing GTF/GFF files
The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).1760 days ago
GEO2R: compare two or more groups of Samples
GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.1230 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
...pFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinishe...1561 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
...al with very fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly suitable to compare assemblies with each other or...1459 days ago
- compare two BWA mapping methods with the online hg18-mapped data We first operate a rapid inspection of the different BAM files using samtools flagstat....
835 days ago
- ...ationships between categories. They are often used in fields such as bioinformatics, where they can be used to analyze gene expression data or to compare the results of different expe...
406 days ago
- ...of search and comparison. By adopting a common set of annotations, data-store operators can deploy federated instances of GCV, allowing users to compare genomes from different provid...
348 days ago
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