Results for "Comparison"
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Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny...425 days ago
Comment on "Sibelia: A comparative genomics tool"
...improve coverage. References ========== 1. Ilya Minkin, Nikolay Vyahhi, Son Pham. "SyntenyFinder: A Synteny Blocks Generation and Genome Comparison Tool" (poster), WABI 2012 ht...1287 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...tq We will now use kat comp to create a kmer content comparison. Use kat comp --help to get help for the program, then create a comparison between the combined reads an...1339 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny program makes it possible to speed up the computations by over two times in comparison with SatsumaSynteny2, another popular tool. Such high efficiency was attained by implem...1413 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png1551 days ago
Comment on "SPAdes hybrid genome assembly"
...d/contigs.fasta samtools faidx SPAdes_hybrid/contigs.fasta NODE_1_length_4620446_cov_135.169_ID_22238 > single_contig.fa Finally, a quick comparison to the reference: sudo apt...2176 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...s step, and therefore the resulting assemblies are contiguous (i.e. long) but very noisy (i.e. full of errors) We start with an all against all comparison: minimap -Sw5 -L100 -m0...2177 days ago
Comment on "List of popular bioinformatics software/tools"
...T is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast su...3038 days ago
Comment on "R and Bioconductor Tutorial"
Useful R resource http://ucanalytics.com/blogs/r-vs-python-comparison-and-awsome-books-free-pdfs-to-learn-them/3104 days ago
- OmiRas, a web server (from GenXPro Frankfurt) for the annotation, comparison and visualization of interaction networks of non-coding RNAs derived from small RNA-Sequencing experiments of two different conditions. http://tools.genxpro.net/omiras
3589 days ago
