1221 days ago
Introduction to Bioinformatics and Computational Biology
This is the course material for STAT115/215 BIO/BST282 at Harvard University. Xiaole Shirley Liu (lead instructor)Joshua StarmerMartin HembergTing WangFeng Yue Ming T...1192 days ago
1211 days ago
A guide to machine learning for biologists
Because of the increasing size and inherent complexity of biological data, there has been an increase in the application of machine learning in biology to create useful and predicti...855 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allo...small in-memory footprint at the cost of packing and unpacking. The RAM and computa...819 days ago
Ten quick tips for deep learning in biology
By taking a comprehensive and careful approach to deep learning based on critical thinking about research questions, planning to maintain rigor, and discerning how work...767 days ago
415 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
This tutorial describes the usage of homologizer to phase gene copies into polyp...abbreviated version of a soon-to-be published paper in Methods in Molecular Biology. Please see that paper for ma...332 days ago
bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pi...47 days ago