Results for "Computational Biology"
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New updates in e!77 !! Updated human gene set (GENCODE 21) Updated rat gene set including manual annotation from HAVANA New species: Vervet-African green monkey Imported Transcript Support Levels (TSLs) from UCSC for human and mouse Imported APPRIS f...Tags: Bioinformatics, Computational Biology, Ensembl, Release77, e!77
3504 days ago
How far can bioinformatics go creating organisms used for testing?
"I think you can get very far on a technical level. The problem is that a human body is more complex than just one cell." ... "At some point we still need clinical tests on animals and humans before we use it for real treatment. But we will likely be able to remove 99 % of animal tests in the fut...Tags: Bioinformatics, Computational Biology, Future
3492 days ago
- Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process genomic data in batch by running principal comp...
Tags: Bioinformatics, Computational Biology, Google, Genomics, Cloud
3492 days ago
Big genomic data on Google Cloud Platform
As the cost of DNA sequencing has dropped, the volume of data produced has risen into the petabytes. Google is working with the genomics community to define a standard API for working with big genomic data sets in the cloud. Building on Google Cloud Platform, we show how to store, process, explor...Tags: Bioinformatics, Computational Biology, Google, Genomics, Cloud
3492 days ago
IPython: Interactive notebooks
The IPython Notebook is a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document. These notebooks are normal files that can be shared with colleagues, converted to other formats such as HTML or PDF, etc...Tags: Bioinformatics, Computational Biology, IPython, Interactive, Notebooks
3471 days ago
- deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. To do so, deepTools contains useful modules to process the mapped reads data to create coverage files in standard bedGraph and bigWig file formats. By doing so, de...
Tags: Bioinformatics, Computational Biology, NGS, deepTools, Genome, RNA-Seq, Visualization, Tools
3470 days ago
- An R package for analysing ontologies and protein domain annotations has been published in PLoS Computational Biology (http://dx.doi.org/10.1371/journal.pcbi.1003929). The package is distributed as part of CRAN (http://cran.r-project.org/package=dcGOR), and also at GitHub for version control.The ...
Tags: Bioinformatics, Computational Biology, R, dcGOR, Tool, Protein, Package
3470 days ago
- After their presentation at the international “user!” conference, data analysis specialist eoda starts the public alpha testing of translate2R. With the start of alpha testing the innovative migration solution by the company hailing from Kassel discards the working title “transl...
Tags: Computational Biology, R, SPSS, Translate, Migrate, Code
3457 days ago
- Suhas Rao and Miriam Huntley (of the Aiden Lab) describe a 3D map of the human genome at kilobase resolution, revealing the principles of chromatin looping. Guest Origami Folding: Sarah Nyquist. Suhas S.P. Rao*, Miriam H. Huntley*, Neva C. Durand, Elena K. Stamenova, Ivan D. Bochkov, James T. Ro...
Tags: Bioinformatics, Computational Biology, NGS, Genome, RNA-Seq, Visualization, Chromosome, Chromatin
3436 days ago
Rosalind Bioinformatics problems !!!
Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/Tags: Bioinformatics, Computational Biology, NGS, Genome, RNA-Seq, Algorithms, Online, Rosalind
3430 days ago
