Results for "Compute"
Users
Interests: Computer games3624 days ago
- Brief description: Lecturer, Department of Bioinformatics and Computer Applications, St Aloysius College Mangalore
2919 days ago
- +5 more Users
Blogs
Software and Tools to detect structure variation with long reads !!
...;Chaisson et al. 2014 and adds several key features including the following. Unified variant calling user interface with built-in cluster compute support Small indel calling...2601 days ago
- ...r genomes. It implements methods inspired from techniques developed to compute physical maps of extant genom...menon. The species tree is used, in some additional internal steps, to compute a score for the remaining con...
2524 days ago
- +2 more Blogs
Bookmarks
Public Databases for Bioinformatics !
...nce 4 Core Xeon 108TB disk storage 10Gb ethernet to SCG3 Access atx: dhara:5000 Has btsync server (try it - its much better than dropbox) Compute Servers: nandi: Kundaje an...1133 days ago
- Arvados is a free and open source bioinformatics platform for genomic and biomedical data. User can Store | Organize | Compute | Share the data for free.
3508 days ago
- +24 more Bookmarks
Pages
Monitor running jobs on Linux server
...been up, how many users are logged in, and the short/medium/long-term compute load on the machine. If you r...and %MEM towards the right, as well as the COMMAND. This tells you how compute- and memory-intensive your pr...3614 days ago
Genome Assembly Tools and Software - PART2 !!
...ly. The established software Phrap is used to compute meaningful error probabilitie...for computing genome assembly likelihoods. It computes the likelihood of reads with...n and Assembly ProgramThe BEAP is a computer program that uses a short st...2679 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...uman genome in less than 6 days using 54 Gb of RAM and a 123-processor compute cluster for calculation of an...Genome Biol 11(8):R86, 2010 PubMedCentral Galaxy Cloudman: Delivering compute clusters. BMC Bioinformatics...3773 days ago
List of In-silico Binding Site Prediction Tools
...STp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography....jsp Active Site Prediction of Protein server computes the cavities in a given prot...s. MolAxis handles two distinct scenarios: It computes channels that connect a sing...3737 days ago
- +7 more Top-level pages
Wire posts
News
- ...of the k-mers by one base until the repeats are eliminated. This ensures that the final assembly of the exon is highly accurate while minimizing compute time. The Cold Spring Harbor...
3540 days ago
Opportunity posts
Postdoctoral scientist genome analytics/ genome bioinformatics (m/f/*)
...ur profile: Degree in bioinformatics, biostatistics, or equivalent Experience in the processing and analysis of large-scale genomics data using compute clusters / high-performance c...1534 days ago
Bio-Scripts
Install Parrot Virtual Machine !
...aders................................done. auto::sizes - Determine some sizes...............................done. auto::byteorder - Compute native byteorder for wordsize...1531 days ago
- ...$ wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/...5:56-- https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/...$ wget http://developer.download.nvidia.com/compute/cuda/10.2/Prod/local_installe...
1547 days ago
- +2 more Bio-Scripts
Tags
- Arvados is a free and open source bioinformatics platform for genomic and biomedical data. User can Store | Organize | Compute | Share the data for free.
Tags: Bioinformatics, Computational Biology, Big data, Analysis, Share, Run, Compute, Free, Arvados, Organise, Store
3508 days ago
- Tallymer is based on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the k-mer size. Tallymer can process large data sizes of several billion bases. We used it in a variety of applications to study the genomes of maize and other plant species. In particu...
Tags: Tallymer, method, compute, K-mer, frequencies, application, annotate, large, repetitive, plant, genomes
2264 days ago
Comments
Comment on "Run multiple bash command in screen !"
srun --partition=compute --nodes=1 --ntasks-per-node=40 --pty bash831 days ago
- ...ilable command line options. $ ./fastANI -h One to One. Compute ANI between single query and...genome assemblies in fasta or multi-fasta format. One to Many. Compute ANI between single query geno...
1095 days ago
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