Results for "Conda"
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snakepipes: A toolkit based on snakemake and python for analysis of NGS data
...ATAC-seq* scRNA-seq Hi-C Whole Genome Bisulfite Seq/WGBS (*Also available in "allele-specific" mode) snakePipes can be installed via conda : 'conda install -c mpi-ie -c bioconda...1816 days ago
LoRMA: A tool for correcting sequencing errors in long reads
...h high coverage. Furthermore, when the coverage of the read set is at least 75×, the throughput of the new method is at least 20% higher. conda install -c atgc-montpellier l...2082 days ago
- ...uidelines to create, manage and distribute bioinformatics packages (e.g conda) and containers (e.g docker, singularity). BioContainers is based on the popular frameworks Conda, Docker and Si...
1550 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
...hromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: conda install -c bioconda -c conda-...1518 days ago
sunbeam: A robust, extensible metagenomics pipeline
...beam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies,...1431 days ago
GROMACS: a versatile package to perform molecular dynamics
...ed to provide a user friendly and efficient MD experience by performing many preparation and optimization steps automatically. GROMACS conda https://bioconda.github.io/recipes/gromacs/REA...1381 days ago
chromatiblock: Scalable, whole-genome visualisation of structural changes in prokaryotes
To create a fresh environment for chromatiblock to run in do: conda create --name chromatiblock conda activate chromatiblock conda install chromatiblock --channel conda-forge --channel bioconda Then in future to run chro...1365 days ago
ncbi-datasets-cli -- Quickstart: command line tools !
...oss all domains of life from NCBI. Use dataformat to convert metadata from JSON Lines format to other formats. Conda download: https://anaconda.org/conda-forge/ncbi-datasets...894 days ago
SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
...Gzip compressed A growing collection of handy utilities, also for quick inspection of the datasets Can be easily installed via conda: conda install -c bioconda seqfu...810 days ago
