Results for "Core"
Bio-Scripts
Python script to download covid genome !
...g/ has more (1200?), but they require you to sign up import requests import yaml seqs = yaml.load(requests.get("https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-seq...1147 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse comman...1112 days ago
Install Parrot Virtual Machine !
...upported compiler warnings.................done. gen::config_h - Generate C headers.................................done. gen::core_pmcs - Generate core pmc list........................1548 days ago
- ...^ [ 78%] Linking CXX executable ../../bin/sniffles-core-1.0.5/sniffles [ 78%] Built...ster/Cluster_SVs.cpp.o [100%] Linking CXX executable ../../bin/sniffles-core-1.0.5/sniffles-debug [100%]...
2109 days ago
Bash commandline to install Anaconda !
...5.5-py37_0 ... installing: curl-7.64.0-hbc83047_2 ... installing: dask-core-1.1.4-py37_1 ... installing:...py37_0 ... installing: jsonschema-3.0.1-py37_0 ... installing: jupyter_core-4.4.0-py37_0 ... installing:...1566 days ago
- (py36) [wsu29@bladeamd-2 lofreq]$ lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.7 (Final) Release: 6.7 Codename: Final
1549 days ago
Pack a perl program with their dependencies on Ubuntu !
...ome with the human genome reveals that about sixty percent of genes are conserved (Adams et al. 2000). That is, the two organisms appear to share a core set of genes. Researchers hav...1522 days ago
Commands to install conda in Ubuntu !
...5.5-py37_0 ... installing: curl-7.64.0-hbc83047_2 ... installing: dask-core-1.1.4-py37_1 ... installing:...py37_0 ... installing: jsonschema-3.0.1-py37_0 ... installing: jupyter_core-4.4.0-py37_0 ... installing:...1522 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --...
1453 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...
1226 days ago
