CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two c...enomeSize=2m \ -maxThreads=2 useGrid=false \ -pacbio-raw \ ~/pacbio/dna/s...1939 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, de...ntary alignment flag. Chimeric reads are indicative of structural variation in DNA-s...1831 days ago
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10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 b...Inc. is one of the leading players in DNA sequencing and array-based te...nstance, Germany. The company provides DNA and RNA sequencing and bioser...of Next Generation Sequencing, Sanger DNA s...1253 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...of taking a large number of short DNA sequences and placing them ba...riginal chromosomes from which the DNA originated relates to genome...in applied topics, identifying the DNA sequence of an organism is us...s.This function trims adapters, barcodes and other contaminants from t...1198 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, standalone software/tools, a...631 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • &n...p;Deorowicz, S., Grabowski, Sz., Compression of DNA sequences in FASTQ format,&nb...hisper: read sorting allows robust robust mapping of DNA s...857 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genome...ry Genetics Analysis A biologist-centric software for evolutionary analysis of DNA a...671 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literat...ce variation 1. Begun D. J., Aquadro C. F., 1992 Levels of naturally occurring DNA...671 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information....s) division name -- e.g. BCT, PLN, VRT, MAM, PRI... comments Genetic codes file (gencode.dmp): genetic...654 days ago