Results for "DNA test"
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Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scien...uplications of simple sets of DNA bases (typically 1-5bp) such...ce of a reverse transcriptase.DNA TransposonsRetrovirus Retrotr...nscription by RNA polymerase, DNA strands have upstream and dow...ucleases) designed to cut the DNA...2223 days ago
- alignment: the mapping of a raw sequence read to a location within a ref...-end sequencing, both ends of a single DNA or RNA fragment are sequenced...ng process where both ends of a single DNA or RNA fragment are sequenced...encing process where only one end of a DNA...
2881 days ago
Genome Assembly Tools and Software - PART1 !!
...itable for comparison. DNA Baser 4.36 – DNA Sequence Assembly & Analy...Sequencher 5.4.1 – DNA Sequence Assembly and Analysis...manner. From a good number of tests we see the program yields ex...hasing genomic variants using DNA sequencing reads, also called...2697 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be exe...ompute, calculate, add, sum, multiply, ... print, display, input, output, edit, test , etc. with careful indentati...2670 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks...ry that powers www.xkpasswd.net Test-More/test-more - Test2, Test::More...wtih semantic validation pjlsergeant/test-bdd-cucumber-perl - Test...mind/perlqual - Wrapper for some tests for Perl code quality trize...2501 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have origin...lly reflects evolutionary history. cDNA -- Complementary DNA; DNA that is synthesized, by...sequence isolated at random from a cDNA library, used for identificat...do with any other clade. repetitive DNA...2474 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option fo...detection --iontorrent this flag is required for IonTorrent data --test runs SPAdes...
2363 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe...f = 1; $f *= $_ for 1..5; print $f' # Calculate greatest common divisor (GCM)perl -MMa...> length($l); END { print $l }' # Print the shortest lineperl -ne '$s = $_ if $. =...2314 days ago
List of visualization tools for genome alignments
...ults but also for improving analysis protocols, testing data quality, and generat...//www.sanger.ac.uk/resources/software/artemis/ DNannotator Annotation web...genomic sequences http://bioapp.psych.uic.edu/DNannotator.htm JVM Java V...2295 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language whic...ollowing contents: $ cat data/test.tsvcontig1 ACTGTCTGTCACTGTGTT...e file. $ awk '{print;}' data/test.tsvcontig1 ACTGTCTGTCACTGTGTT...$2;}END{print "-------"}' data/test.tsvHeader,Sequencecontig1,ACT...n i) print j"<="i[j]}' data/test.tsvcontig1<=1contig2<=1...2291 days ago
