2034 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone h...elease sanityChecks.py scripts src test ➜ Platypus git:(master) s.../man/man5 /usr/local/lib/pkgconfig if test -n ""; then mkdir -p -m 755 ;...bgzip htsfile tabix /usr/local/bin if test -n ""; then install -p ; fi...2034 days ago
2033 days ago
Finding Kmers from fasta sequence file
Save it in sample.fa >test TAATGCCATGGGATGTT jellyfish count -m 3 -s 100000 sample.fa -o sample.jf jellyfish dump -c sample.jf It return TGT 1 GAT 1 GGG 1 GGA 1 CAT 1 TGC 1 TAA 1 GCC 1 CCA 1 GTT 1 TGG 1 ATG 3 AAT 11987 days ago
Bash commandline to install Anaconda !
...alling: heapdict-1.0.0-py37_2 ... installing: idna-2.8-py37_0 ... installing: i...installing: tblib-1.3.2-py37_0 ... installing: testpath-0.4.2-py37_0 ... install...lling: pygments-2.3.1-py37_0 ... installing: pytest-4.3.1-py37_0 ... installing:...1570 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executabl...3-2ubuntu0.1) ... #you can find the test script web.pl at https://bioi...Wide character in say at script/dumptest.pl line 13....appointment, Online booking on of lab tests, creating your online medica...1526 days ago
Perl One-Liner to print only non-uppercase letters
#Go through file and only print words that do not have any uppercase letters. perl -ne 'print unless m/[A-Z]/' dna.fa > dnaOnlyLowercase.fa #To lowercase everything perl -pne 'tr/[A-Z]/[a-z]/' dnaUpperCase.fa >dnawithoutuppercase.fa;1398 days ago
1457 days ago
Command to sort the bed file !
#Command to sort the bed file sort -V -k1,1 -k2,2 test.bed1404 days ago
1355 days ago