Results for "DU"
Bio-Scripts
Remove duplicate lines with perl
#! perl -sw use strict; my %lines; #open DATA, $ARGV[0] or die "Couldn't open $ARGV[0]: $!\n"; while () { print if not $lines{$_}++; } __DATA__ apple apple plum vinegar apple banana banana banana apple2295 days ago
Remove the duplicated line present only next to each other with Perl
#!/usr/bin/perl use strict; use warnings; { $_ = ; my $next_line; while( $next_line = ) { #print "current line: $_ -- next line: $next_line$/...2295 days ago
- # generate dotplot lastdb test/ref.fa lastal -f TAB test/ref.fa test/contigs.reduced.pacbio.fa | last-dotplot - test/contigs.reduced.pacbio.fa.ref.png lastal -f TAB test/ref.fa test/contigs.reduced.nanopore.fa | last-dotplot - test/contigs.reduced.nanopore.fa.ref.png
2254 days ago
Biological Sequence handling with Perl !
...$reversed; } # A human-readable description of the object sub asString { my $self = shift; return $self->type . '(' . $self->length . ' residues)'; } # Concatenate two se...2183 days ago
Perl script to find coding regions in DNA sequences
...tain the log-likelihood ratio. # It is recommended the use of logs to manage calculations involving # small numbers between 0 and 1. Log of the product is equal to the # the sum...2157 days ago
- ...sh.hpp ➜ bloomfilter git:(master) swig -Wall -c++ -perl5 BloomFilter.i Unable to find file 'BloomFilter.i'. ➜ bloomfilter git:(master) git submodule update --init ➜ bloomfilt...
2154 days ago
- ...P::Simple LWP::Protocol::https Archive::Extract Archive::Tar Archive::Zip CGI DBI Time::HiRes DBD::mysql Encode File::Copy::Recursive Perl::OSType Module::Metadata Statistics::Lite...
2146 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name he...2142 days ago
- ...n2.kmers.fa.histo mer_counts.jf CMD finished (6 seconds) CMD: jellyfish dump -L 2 mer_counts.jf > jellyf...K25.stats.C50.pctSD10000.accs 6275795 / 16641634 = 37.71% reads selected during normalization. 0 / 16641...
2129 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq...split into individual reads --split-spot...ference Filters for individual reads Applied only wi...n spots' for tool ./fastq-dump : 2.9.1 ( 2.9.1-1 )
2128 days ago
