Results for "Dataset"
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...2) Nature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysis using a very small synthetic dataset from a well studied organism....3664 days ago
Integrative Genomics Viewer (IGV) tutorial
...ad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations,...3595 days ago
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The seque...1103 days ago
- ...compute the substitution rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or even a poorly assembled scaffold dataset. It is especially useful for...
2816 days ago
- ...embly (HGA) method. The tool will apply: 1. Partitioning a given reads dataset into a given number of partit...sing velvet with kmer value of 31). 5. Finaly, re-assembling the whole dataset with the merged contigs or th...
2725 days ago
- ...sp;manual. KmerGenie can be used to determine the best k-mer size, minimum abundance of correct k-mers, and genome size estimation for your dataset.
2716 days ago
- UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries....
2589 days ago
Omega2: metagenome assembly pipeline
...n graph assemblers (SOAPdenovo, IDBA-UD and MetaVelvet), Omega provided comparable overall performance on a HiSeq 100-bp dataset and superior performance on a MiSeq 300-bp dataset. In comparison with Celera on...2502 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...hort reads, and apply it to the assembly of a dataset of paired 75-bp Illumina read...es with unique high quality extensions in the dataset, avoiding an explicit error c...red-end placements. Practical issues with the dataset are described, and prospects...2382 days ago
ONT assembly and Illumina polishing pipeline
...u contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obtained in...Perform correction of contigs using pilon and the Illumina dataset....2365 days ago
