Results for "Deployment Tool"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-s...ceforge.net/projects/lmat/ stringMLST k-mer-based tool for MLST directly from the ge...MLST Taxonomer k-mer-based ultrafast metagenomics tool for assigning taxonomy to seq...2392 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00&r...rxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing...s://github.com/jw156605/SLICER SinQC: A Method and Tool to Control Single-cell RNA-se...2371 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...dash; Standalone command line tool, takes just a few minutes per...BI environment. BEACON (automated tool for Bacterial GEnome Annotati...ion) is KEGG's internal annotation tool for K number assignment of KE...2352 days ago
Bioinformatics Web Application Development with Perl
...azing things with modern Perl tools. If you still think of Perl web de...piecemeal, thanks to the new tools and techniques of modern Perl. See...d to make web development and deployment simpler. Any of a dozen of t...for web services, development tools, testing systems, and interf...2342 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine whi...mation regarding which sequences came from which reference file. BBSplit is a tool that bins reads by mapping to...2335 days ago
- There are several ways you can convert...f(NR%4==2) print;}' > file.fa FASTX-toolkit fastq_to_fasta is available in the FASTX-toolkit that scales really well wi...eveloper, there is another option using a tool called seqtk seqtk seq...
2326 days ago
List of visualization tools for network biology
Network analysis is any structured techniqu...ies and/or population level. Few tools published in BMC are listed...graph Collection of network analysis tools with the emphasis on efficie...ta http://tinyurl.com/yEdGraph/ Web tools for network analysis APID&n...2309 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for sho...ist of genome alignment visualization tools, which could be useful for a...amView Genome browser and annotation tool that allows visualization of...r.htm JVM Java Visual Mapping tool for NGS reads http://www.spr...2304 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive...q workflow that supports large scale RNA-Seq data analysis too. The tool also supports biological cont...2285 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betwee...in the recipient genome and provide novel function. Following are the popular tool to detect HGT in genomes: T-...871 days ago
