Results for "Dev"
Bio-Scripts
...admins should run: sudo apt-get install -y build-essential libexpat1-dev libssl-dev libmysqlclient-dev libxml2-de...Log::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::Devel List::Util Test::XML::Simpl...2143 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1100 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...m apm - Atom Package Manager powered by https://atom.io Usage: apm where is one of: ci, clean, config, dedupe, deinstall, delete, dev, develop, disable, docs, enab...1175 days ago
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2"...2283 days ago
- ...t_dir/insilico_read_normalization --max_pct_stdev 10000 --left /media/urbe/MyP...K25.stats --max_cov 50 --min_cov 1 --max_pct_stdev 10000 > pairs.K25.stats.C50.p..._dir/chrysalis/inchworm.K25.L25.DS.fa.min100 1>/dev/null * Running CMD: bash -c...
2126 days ago
Installing Platypus on Ubuntu !
...aster) sudo apt-get install python3-dev Reading package lists... Don...es will be installed: libpython3-dev libpython3.6 libpython3.6-dev...nic-updates/main amd64 libpython3.6-dev amd64 3.6.6-1~18.04 [44,8 MB]...sly unselected package libpython3.6-dev:amd64. Preparing to unpack ....2018 days ago
- ...id libjs-underscore libssl1.0-dev libuv1-dev node-abbrev node-ansi node...de-wrappy node-yallist nodejs-dev npm 0 upgraded, 73 newly ins...aring to unpack .../07-libuv1-dev_1.18.0-3_amd64.deb ... Unpac...0.4-3) ... Setting up nodejs-dev (8.10.0~dfsg-2ubuntu0.4) ......
1552 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo apt-get install libncur...1557 days ago
Install python pip and numpy on Linux / Ubuntu
...ll be installed: libexpat1-dev libpython-all-dev libpython-dev libpython2.7-de...-updates/main amd64 libexpat1-dev amd64 2.2.5-3ubuntu0.2 [122 k...unselected package libexpat1-dev:amd64. (Reading database ......u1) ... Setting up libexpat1-dev:amd64 (2.2.5-3ubuntu0.2) ......1549 days ago
Installing docker for Bioinformatics on Ubuntu !
...405c304fa92af8aadaa1d9b31bf4b0ad94 + sudo -E sh -c apt-get update -qq >/dev/null + sudo -E sh -c DEBIAN_...active apt-get install -y -qq apt-transport-https ca-certificates curl >/dev/null + sudo -E sh -c curl -f...1512 days ago
