Results for "Duplication"
Users
About me: ...t, currently investigating the impact of transposable elements on the adaptation of the rice genome under fungal pathogen challenges and genome duplication. Experienced in using next-ge...1147 days ago
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ements between sequences. This software is useful in studying genome duplication and evolution. It can also ai...brate genomes, and especially the changes following the whole-genome duplication in teleost fish, by tracing t...2617 days ago
Structural variation: the hidden genomic treasure
...hing. CNVs are closely related to segmental duplications (SDs): SDs can stimulate the...riants (SVs) such as deletions, insertions, duplications, inversions and translocatio...translocations, and unbalanced ones such as duplications and deletions (copy number v...2710 days ago
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Bookmarks
- Chromosome number is a remarkably dynamic feature of eukaryotic evolution. Chromosome numbers can change by a duplication of the whole genome (a process termed polyploidy), or by single...
3395 days ago
- Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC conten...
2949 days ago
- +11 more Bookmarks
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...19315, 2011. Full Text Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication. Amores et al, Genetics 188(4...3786 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...on, selected ENCODE annotation, allele frequency in the 1000 Genomes Project, allele frequency in the Exome Variant Server (ESP6500), segmental duplication annotation, SIFT, PolyPhen2,...2916 days ago
Wire posts
News
Genome of Rainbow Trout Sequenced
Major finding: “In humans and most vertebrates the duplication events were older so there are fewer duplicated genes still present. Most of the duplicated genes get lost or modif...3670 days ago
NGS Platforms launched by BGI’s MGI Tech
...y DNBseq™, MGISEQ delivers quality data with accuracy for SNP and Indel calling rate of 99.9% and 99%, respectively, along with decreased duplication rate down to less than 2 perc...1949 days ago
ResearchLabs posts
- ...natural, and genomes. Our research interests encompass a wide range of topics, including the evolution of organellar and nuclear genomes, gene duplication and the origin of novel funct...
2998 days ago
- ...hift and elimination, evolution of repetitive sequences, and reconstructing ancestral genomes. We are testing causal links between whole-genome duplication events, karyotypic variation...
1222 days ago
Groups
..., database parsing, tools for structural biology, and other Bioinformatics. BioRuby is one of a number of Bio* projects designed to reduce code duplication. In 2011 the BioRuby project...3927 days ago
Tags
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is also a Ka corresponding to it, which refers to the av...Tags: wgd, duplication, whole, genome, plan, tools, software, synteny, list
1162 days ago
Comments
- ...Removing and Quality Control for fastq data. dupRadar dupRadar. An R package which provides functions for plotting and analyzing the duplication rates dependent on the expres...
2144 days ago
