Results for "Elements (TEs)"
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Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annot...e ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable eleme...1814 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Eleme...1741 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant graphics visualization of c...romosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the...ltaneously on the same plot. annotating groups of eleme...1716 days ago
RepeatModeler2: automated genomic discovery of transposable element families
RepeatModeler2 represents a valuable addition to the genome annotation toolkit that will enhance the identification and study of TEs in eukaryotic genome sequences. Re...1630 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe p...d associated data. PhyloXML provides elements for commonly used features, s...ion events. Using these standardized elements allows interoperability betwe...nd the provision of <property> eleme...1624 days ago
- Raku is a member of the Perl family of programming languages. Formerly known as Perl 6, it was renamed in October 2019. Raku introduces eleme...
1573 days ago
- Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RN...rtual 4C page, where we provide multiple methods to link distal cis-regulatory eleme...
1212 days ago
- Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic eleme...
1176 days ago
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean in...tree or by a list of set unions. The tool also allows obtaining subsets’ eleme...690 days ago
HairSplitter: assembling long reads in an unknown number of haplotypes
Pros and cons of HairSplitter Limitations of HairSplitter: Not very fast: it re-polishes...er can recover haplotypes and distinguish repeated elements Only needs sequencing reads,...er can recover haplotypes and distinguish repeated eleme...529 days ago
