Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration...are in fasta format, even though they end if ”.faa” instead...value] [-gapopen open_penalty] [-gapextend extend_penalty] [-qcov_hsp_pe...value] [-gapopen open_penalty] [-gapextend exten...2256 days ago
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List of motif discovery tools !
...ene Ontology. ConSurf-DB -- evolutionary conservation profile...atabase Automatically calculate evolutionary conservation scores of key...c supplement, prePRINTS -- A compendium of protein fingerprints Search...tein annotation by searching for evolutionarily conserved motif-like pat...2005 days ago
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Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of cod...be called in a loop. Prints $_ at the end This counts the...nbsp;inFile > outFile Append a new line to each line...t is not a letter, white space or line end (repl...1393 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to me...cing computer in a genome sequencing experiment. Depending on the sequencing system u...sequencing. These reads can be either “single ended&rdq...1216 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioinformatics position in the life sciences ma...and bioinformatics come from? How the heck did you end up in this field? Why program...llow on with some suggestions of how you want to extend your...1210 days ago
Innovative blog and portfolio website!
Do you ever feel overwhelmed or frightened by browsing through someone else's beautiful, responsive portfolio we...you could create one for yourself?So there you have it!Read all the way to the end for a...1060 days ago
Useful Bioinformatics Analysis Tools !
...48–2756, FQSqueezer Experimental high-end compressor of FASTQ files. &...cle no. 160, Kmer-db Tool for estimation of evolutionary distances in a collection..., Kokot, M., Danek, A., Kmer-db: instant evolutionary distance estimation, ...875 days ago