10 NGS services companies around the globe !
The global NGS services market is expected to reac...pipelines and workflows, compute resources, data analysis reports, and case studies. GA...se construction, genome research, and bioservices analysis system consulting services. M...1256 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for impro...scriptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio Amplicon Analysis) – separates complex mi...989 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to mediu...i.org/cms/research/projects/annotation-service/ Frequent command use for the analysis are at: https://bioinformati...1201 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1152 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015...1044 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fa...nt annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment,...874 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using k-...860 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structur...nomes Conduct comparative biometric analysis of chromosomes of different o...s/Metagenomes A data management and analysis system for metagenomes I...ams of phylogenetic and evolutionary analysis. PhyloPat -- the phyloge...674 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.org...541 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/wat...cle/pii/S2666389921002300 4. A Reproducible Data Analysis Workflow with R Markdown, Git...utational workflows is automated using continuous analysis https://www.nature.com/a...538 days ago