Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.Tags: BLAST, BLAT, EnsEMBL
3883 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores and constrained ele...Tags: Bioinformatics, Computational Biology, Genome, RAD-Seq, NGS, Comparative Genomics, Resources, EnsEMBL
2982 days ago
Tags: Bash, Scriptn GTF, Converts, EnsEMBL, NGS
2099 days ago
A script to convert Ensembl, Unigene, Uniprot and RefSeq IDs to Symbol IDs
Hello, I am looking for a program/function that converts different sources of IDs to Symbol IDs. The script in R will be an added advantage ... ThanksTags: Ensembl, Unigene, Uniprot, RefSeq, IDs, Symbol IDs Convert, R
3549 days ago
Tags: Bioinformatics, Computational Biology, Ensembl, Release77, e!77
3493 days ago
Comparative Genomics in Ensembl
The Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.Tags: Bioinformatics, Computational Biology, Genomics, Comparative Genomics, Ensembl
3385 days ago
Tags: Bioinformatics, Computational Biology, Genomics, Comparative Genomics, Ensembl
3239 days ago
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele of the variant may have on each transcript. The set of consequence terms, defined by the Sequence Ontology ...Tags: Ensembl, Variation, Calculated, variant, consequences, Variant, Effect, Predictor
2057 days ago