Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of input arguments is lower than 2 # return a message showing the error if (scalar(@ARGV) < 2) { print "dnaloglkh.pl cod...2158 days ago
2129 days ago
2126 days ago
Perl script to extract a sequence from multifasta with range !
...ontigs.fasta > contigs-gt300-lte600.fasta my $minlen = shift or die "Error: `minlen` parameter not provided\n"; my $maxlen = shift or die "Error: `maxlen` parameter not provi...2069 days ago
Installing Platypus on Ubuntu !
...le:447: recipe for target 'installdirs' failed make: *** [installdirs] Error 1 ➜ htslib-1.9 git:(master)...-lpython2.7 -o build/lib.linux-x86_64-2.7/variant.so cythoning cython/cerrormodel.pyx to cython/cerrormode...2022 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -...fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -...fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -...fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -...1552 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5...1545 days ago
Exit Bash Script When Any Command Fails
...mmand=$current_command; current_command=$BASH_COMMAND' DEBUG # echo an error message before exiting trap...---------------------------------------------- #With a subs exit_on_error() { exit_code=$1 la...1523 days ago
1517 days ago
Installing docker for Bioinformatics on Ubuntu !
...-l, --log-level string Set the logging level ("debug"|"info"|"warn"|"error"|"fatal") (default "info")...es Commands: attach Attach local standard input, output, and error streams to a running containe...1516 days ago