Next Generation Sequencing (NGS) Tutorials
...standing the basics of genome sequencing: Tutorial by Luke Josti...etic variations using the HugeSeq pipeline DOI: 10.1038/n...e analysis pipeline for whole-exome data http://www.biomed...t analysis of next-generation sequencing data. http://www....3486 days ago
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Serv...data/$LAB/ lab accessible data should store lab project data here e.g. ATAC-seq prediction data, enhancer pre...1138 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays,...ith DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: https:/...3705 days ago
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Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metageno...3573 days ago
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RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Inst...ion of transcriptomes from RNA-seq data. Trinity combines three...ysalis, and Butterfly, applied sequentially to process large vol...Inchworm assembles the RNA-seq data into the unique sequence...t https://github.com/trinityrnaseq/trinityrnaseq/wiki ............2964 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of...ng environment Retrieving and storing sequencing files (your own data or from public sources) Checking sequence quality, trimming, gener...expression datasets (microarray or RNA-Seq) Microarray Basic analy...2930 days ago