Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for imp...read sequencing data to genotype a wide spectrum of genetic variation (Tobias Marschal...mplicon targets from genomic samples to cluster and generate...1005 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the...nalysis Step 1 : Use to wgd mclidentify homologous genes in the genome wgd mcl -n...the corresponding anchor point wgd syn --feature gene --g...1169 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare...database of coexpressed gene networks in mammals Find coexpressed gene lists and networks in human and mouse....lysis on fragmented microbial genetic material. SnoopCGH -- Com...tion resource Find metabolic networks and phylogenomic information...690 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literature: Barton,...of Drosophila pseudoobscura. Genetics 27: 363-394. Recombina...s within chromosome sections. Genetics 118: 445-459. 2. Boyl...by Environment Interactions. Genetics...690 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius...abiologist.asu.edu/peppered-moths-game/play.html General resources The always popu...https://cbs.umn.edu/populus/overview Drift & Gene Flo...690 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius...abiologist.asu.edu/peppered-moths-game/play.html General resources The always popu...https://cbs.umn.edu/populus/overview Drift & Gene Flo...591 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literature: Barton,...of Drosophila pseudoobscura. Genetics 27: 363-394. Recombina...s within chromosome sections. Genetics 118: 445-459. 2. Boyl...by Environment Interactions. Genetics...591 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats...sms. These are just a few examples of the many bioinformatics tools available for explorin...438 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis. Here are some general...436 days ago
24 days ago