Results for "Extend"
Blogs
...s. With a given species tree and domain phylogenies, the procedure infers the composition of ancestral multi-domain proteins. Cocos implements and extend a suggested algorithmic appro...2536 days ago
String graph based genome assembly software and tools !
...sequences of reads sharing the seeds. Such consensus sequences are then extended to contigs. BASE is a...ant improvement in quality for long NGS reads. It is relatively easy to extend BASE to include scaffolding....2335 days ago
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Bookmarks
- ...team provides expertise, training and maintains a high-performance computing (HPC) and storage infrastructure, so as to help develop, maintain and extend life science and medical rese...
3432 days ago
YASS :: genomic similarity search tool
...for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions, and then tries to extend them to local alignments. Thi...2931 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...d ReferencesAlignGraph is a software that extends and joins contigs or scaffol...reads into new contigs; reference contigs are extended or merged; iterating the wh...“primer” therefore help to “extend” the length of the orig...2692 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...llumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench so...eased as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, rep...3525 days ago
Software packages for next gen sequence analysis
...llumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench so...eased as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, rep...3249 days ago
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Opportunity posts
Protein function annotation and machine learning - UPMC - Paris, France
...ready demonstrated in a previous work that the problem of functional annotation is inherent to the ability of uncovering such paths. Now, we shall extend this approach to large scale...3571 days ago
Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016
...independent investigator, and can be of any age or nationality Have Sponsor(s) at not-for-profit Host Institution(s) in India, who is willing to extend the desired commitment and re...2965 days ago
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Bio-Scripts
Installing Porechop on Ubuntu !
...me SCORING_SCHEME Comma-delimited string of alignment scores: match, mismatch, gap open, gap extend (default: 3,-6,-5,-2) End...2112 days ago
Tadpole is 250x faster than SPADes assembler !
...: tadpole.sh in= out= mode=extend Correction: tadpole.sh in=...bA_r2.fq,null mode=correct Extending contigs with reads could b...or begin extension. mincountextend=2 (mce) Minimum kmer count...rs: extendleft=100 (el) Extend to the left by at most this m...982 days ago
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Tags
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast nucleotide databases in an attempt to obtain all sequences that overlaps, directly or indirectly, with the "primer"...Tags: BEAP, Blast, Extension, Assembly, Program, Extend, Contigs, Sequence
2161 days ago
Comments
- ...nbsp; extend [mid|window] [INT left] [INT...bsp; Extend the current window by `INT` b...
1526 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...n penalty for SW-alignment(end2end-global: insertion, deletion, one-end-extend: insertion, deletion). [5(,5,...n penalty for SW-alignment(end2end-global: insertion, deletion, one-end-extend: insertion, deletion). [2(,2,...2129 days ago
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