SKESA: strategic k-mer extension for scrupulous assemblies
...PAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical as...1991 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nuc...1991 days ago
1991 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for ali...ng on the reads and application. lordFAST, a novel long-read mapper tha...SMS technologies to a reference. lordFAST not only has higher sensitivi...1978 days ago
BLAST options, setting and defaults
...significantly improved by Altschul et al. (1997). It is a very fast search algorithm that is used...erent results from BLAST, and may be useful for motif searching, is FASTA. To search nonplant datasets...1965 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly efficient tools to calculate functional properties in net...1961 days ago
Versatile genome assembly evaluation with QUAST-LG
...;option to your command! A short list of the new features (see CHANGES for all): Significant speedup achieved by both use of new fast aligner (minimap2) and the re...1953 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate as exis...1937 days ago
1922 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likel...loring the tree-space. If we use the IQ-TREE stopping rule, RAxML and PhyML are faster in 75.7% and 47.1% of the D...1895 days ago