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Protocol for De novo Genome Assembly using Illumina Reads
...rder therapies. Similarly, pathogens study can lead to treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta file as text or in a FastQ file with their attributes. F...1217 days ago
Run bash script in Perl program !
...HLD_IN, \*CHLD_OUT, \*CHLD_ERR, 'command arg1 arg2', 'optarg',...); It is very similar to IPC::Open2 with the capability to capture all three file handles of the process, i.e.,...650 days ago
Ancient whole genome duplication (WGD) detection tools !
...oading shared libraries: libmpi_cxx.so.40: cannot open shared object file: No such file or directory After that, the.... mix: Hybrid modeling of Ks distribution. pre: preprocess the CDS file syn: Call I-ADHoRe 3.0 to us...1168 days ago
Basic Structure of Snakemake Pipeline Run !
...scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of t...uo; file Note: The default file that snakemake looks for in t...a. config.json = json format file with extra parameters for our...-run bwa Run the snakemake file in order to produce an image...947 days ago
- ...of features including messaging, microblogging, file-sharing, RSS support, access...r installing all the packages, edit the php.ini file and change some recommended s...the download is completed, unzip the downloaded file with the following command:...
724 days ago
- ...e), time limit, memory allocation, number of nodes, number of cores, and files to collect standard output a...ntasks-per-node=16 # number of cores #SBATCH --output=slurm.out # file to collect standard output #...
682 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBa...is "\t|\n" nodes.dmp file consists of taxonomy nodes. T...vision id -- see division.dmp file inherited div flag&nb...ic code id -- see gencode.dmp file inherited MGC flag&nb...mments Genetic codes file (gencode.dmp): genetic code...673 days ago
Common steps for reads mapping !
...mat that is compatible with the mapper. Most mappers accept FASTQ or BAM files. Depending on the quality of...pically involves specifying the input data, reference genome, and output file format. Evaluate the map...436 days ago
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